Openbis Lab Notebook <<<

Openbis ELN Types

In Openbis there are different kind of objects with all have features, these features are called in Openbis types.

As an Openbis-Admin one can add, edit types and objects to the need of the Openbis-Users.

The following types exist:

  • Object Types (like a Chemical, Entry or Antibody)
  • Collection Types (like a Collection or Experiment, more like a global container)
  • Data Set Types (Data Formats that can be choosen as attachments)
  • Material Types (deprecated type kept for backward comaptibility)
  • Vocabulary Types (preset options that can be choosen for another object, like single-end or paired-end for an Illumina sequence run)
  • Property Types (all properties of objects with definition if it is e.g. BOOLEAN, CHAR, VARCHAR, ...)

The following types are installed by default:

Object Types

  • General protocol
  • Storage
  • Storage position
  • Product
  • Supplier
  • Order
  • Request
  • Publication

Collection Types

  • Collection

Data Set Types

  • ELN preview
  • Raw data
  • Processed data
  • Analyzed data
  • Attachment
  • Other data
  • Source code
  • Analysis notebook
  • Publication data

Basic Default Types

Default Types are objects that can be choosen while creating an experiment or experimenatl step.

All have a minimal feature set, in all cases the NAME of the object is mandatory to be set.

  • Entry
  • Experimental Step
  • Default Experiment

Since the ELN-LIMS-LIFE-SCIENCE plugin is activated there are the following additional Basic Default Types:

  • Antibodies
  • Chemicals
  • Enzymes
  • Media
  • Solutions and Buffers
  • Plasmids
  • Plants
  • Oligos
  • RNA
  • Bacteria
  • Cell lines
  • Flies
  • Yeasts
  • General protocols
  • PCR protocol
  • Western blotting protocols

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© Kristian K Ullrich (2024) - ullrich@evolbio.mpg.de

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